rs48020958 SNP Detail

Summary

• ID
  rs48020958
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:29580413 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCTGGCAG TACAGGCAAC
  CACTGCTCTT GTGGTAGTAA GCTGGACAGG GTGAGCATGG GAGATCTCCA ATCCATGCAC
  ACACACATCC CACTCACACC AGGACACAAA TGGGAACAGG AAGGCGGGAC ACAGATGGAA
  TGTGGCTGAC TGGGACAAAG CAGAGCCATG CTCACCAGGC CTCTCTCCTA AGTTCCTTTC
  Y
  ATACCTCAGG GCTTACTCTG ATGGCCCTAG GGTGTGACTT GTTTGGTTCC CATCATAGGG
  AGAACAGAAG AGGGGACACA GGAACTAGCT TCTTTGAATT TTGGGGCTGT GCTGGCACTT
  GTGTCTGAAG GGAAAAGACA AAGCCAGGAG TGGGAGGGGT CCTGAGTGGC CTTGGAGGGG
  CGTGAGTGTG AGACATGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60557920	NES16578191	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	C	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs48020958					SNP	T	T	T	T	C	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60557920	NES16578191	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:29580413 () rs orientation: forward

Symbol	Name	Function Class
Fgd2	FYVE, RhoGEF and PH domain containing 2	within coordinates
Rr405148	regulatory region 405148	408 bp downstream
Rr405149	regulatory region 405149	1641 bp upstream
Rr524885	regulatory region 524885	515 bp distal
Rr524886	regulatory region 524886	296 bp distal
Rr524887	regulatory region 524887	181 bp proximal
Rr524888	regulatory region 524888	1761 bp proximal
Tssr143531	transcription start site region 143531	519 bp downstream
Tssr143532	transcription start site region 143532	499 bp downstream
Tssr143533	transcription start site region 143533	471 bp downstream
Tssr143534	transcription start site region 143534	457 bp downstream