rs48021028 SNP Detail

Summary

• ID
  rs48021028
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57414946 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGTGTTT GTAAATAAGC
  CTTTTATTAT TTTCCTTGTC TGGTTTTAAA TTTTCATGTC TATGGGTATG GTGTTCATTT
  ATGAATGTGT CTTTGTATAC GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  GTGTATTTGT AGAGAGGATA GAGTTTGGCT CAGTGTCTTC TTCAGTCATT CTCCATCTTG
  Y
  TTTTTGAGAC AAGTTCTCTT ACTGAGCTTG GAATTCACGG TTTCTGCAAG GCTGTCTGGC
  CATTGGGCCC CAAGAATTCC CCAGGGGAGT GCCTATACCA GATCTTAAAA TAATTGGCTG
  AAGTGGCTCT GTACCACTAT CCCTTTTTTG AGACAAGAAA GTATGTAGCC CAGGCTGACC
  TAGAAGTCCA TATATAGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62813012	NES17357897	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48021028					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62813012	NES17357897	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57414946 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9396	CpG island 9396	1832 bp distal
D17Mit252	DNA segment, Chr 17, Massachusetts Institute of Technology 252	22 bp distal
Rr529281	regulatory region 529281	1534 bp distal
Rr529282	regulatory region 529282	within coordinates
Tnfsf9	tumor necrosis factor (ligand) superfamily, member 9	189 bp downstream
Tssr145376	transcription start site region 145376	1303 bp downstream
Tssr148901	transcription start site region 148901	1998 bp upstream