rs48021174 SNP Detail

Summary

• ID
  rs48021174
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30254938 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGCCAGAT GTCTTAGGGA
  GCCTCCTTCA CATCTGCCAT TCTCTAAGGT CACACCTTCA CTGCCAACAT TTCCCATCTC
  CGCAGGCCTT CCTACCATCA GTCCCCAATA AATGCACTTG AGATTTGTCA ACTGCCTTAT
  GTCTGGGCCA GGAACGATGG CCTGGCCAGT GTGGGTTGGG GGGCACATTT ATTGGGGTGG
  R
  GTTCCTGGGA AGGTCACTGC CGGTCATACA TCTCCCGTAG GATCTTCATA CTTTCTGAGT
  AGCGAAGCTG GTTCCGATGA GATGCCTCCT TCCACCTAGG AAGGCAGAGG GAGGATTTAG
  CAACTGCTAC AGAGGACACT GGGACAAGCA GCAAGTGAGG CAGGCCACAC TCACCTCTGG
  CGTATGCGTT TCCAACGTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148682395	ENSMUSSNP4918230	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48021174					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30254938 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18809	CpG island 18809	1979 bp distal
Cpgi18810	CpG island 18810	916 bp distal
Hspb6	heat shock protein, alpha-crystallin-related, B6	70 bp downstream
Lin37	lin-37 DREAM MuvB core complex component	within coordinates
Tssr65782	transcription start site region 65782	719 bp downstream
Tssr65783	transcription start site region 65783	653 bp downstream
Tssr65784	transcription start site region 65784	629 bp downstream
Tssr65785	transcription start site region 65785	574 bp downstream
Tssr65786	transcription start site region 65786	561 bp downstream
Tssr65787	transcription start site region 65787	466 bp downstream
Tssr71789	transcription start site region 71789	825 bp upstream
Tssr71790	transcription start site region 71790	683 bp upstream