CGAGAGCTTT ATGCTCAGAT TCAACCTGAG TATAAATAAT CCTGATTTTA AGGCTCTGGC TAACTTTCAG ATTCATAGTC AGGATGATTG CCTGGCAATA CTTAAGACAA TTTGAATTTT AGTTCAGGGG CATCTGTCAT AGGGTCCAGT TGCTAAAGCA GGTCAAACCA AAGAGAGCTT ACCTGTTGCT TGGACAGACA M ACTACATTTC TCTGTTTTTT TCCTGTTCTG AGTGCCATTG AATTCTGCTC TTACCATTAT GTTTTTCTCC TGTCTGCTGG GTTTTGCACT TTGTAGACAG CCCTAGACCT TCAGAGGCCT TCTCTGAGAT TTGCTACTCC ATGGGAAGTT TCTCCTTGTG GAACTTTTCT TCTGGCATAG CTTCTGAGCA GCCTCCCTGC M = A/C Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss63158202 | NES17453875 | PERLEGEN | MM_PANEL2 | f | SNP | C | C | C | C | C | C | A | C | C | C | C | C | C | C | C |
SNP Consensus Information | ||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs48021366 | SNP | C | C | C | C | C | C | A | C | C | C | C | C | C | C | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss63158202 | NES17453875 | PERLEGEN | MM_PANEL | f | SNP | A/C |
Location: Chr18:66055435 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Gm50118 | predicted gene, 50118 | within coordinates | ||||||
Gm50119 | predicted gene, 50119 | 1692 bp downstream | ||||||
Gm58551 | predicted gene, 58551 | 681 bp upstream | ||||||
Rr346799 | regulatory region 346799 | within coordinates | ||||||
Rr346800 | regulatory region 346800 | 1966 bp proximal | ||||||
Rr353052 | regulatory region 353052 | 34 bp distal | ||||||
Rr393825 | regulatory region 393825 | 1849 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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