rs48022349 SNP Detail

Summary

• ID
  rs48022349
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98439280 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCAAACATGC AGATTAAGAA CCACAAAGTC ACCGTAAGTA
  AGACATATTC CTTCCCATAC ATTCTCTCTC CGTTGGGCCA GTGTGTCAGC ACTAGTAACT
  S
  CCTCAGTGTC TTTTCTAGTC TGTCCTTGGC AAGCAGCACC CGTACAACTT CTGTTTCCCT
  ATGACTTTTA ATGAAAAGAT TCTGACTTCT CCCTAAAGAC                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	PWD/PhJ
ss63625991	NES17036610	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	PWD/PhJ
rs48022349					SNP	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63625991	NES17036610	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98439280 () rs orientation: forward

Symbol	Name	Function Class
Ccnt1	cyclin T1	within coordinates
Tssr132942	transcription start site region 132942	10 bp downstream
Tssr136244	transcription start site region 136244	1222 bp downstream