rs48023736 SNP Detail

Summary

• ID
  rs48023736
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:60551505 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAAAATCC CTGACATCAC
  ACGATGCCCC AGTCAGCACA TCTAGCTGTA AGTTTGCTTT AACGTATGGT GTCTGGGGAA
  AATACTGAGA CATCGCAAAA ATATCATTAT ATTTCAAATT TAAACTTTTG AGACTGCACT
  TCATGCTGCG AACACTAGAG GGCAGAAGTC AGAGAGAAAA GGCTACCCTG GAAGGAACTG
  Y
  TCTGGGAAGC TAGGATTTGT ATTTCACTAT GACACACACA ATTTTACTTA AGCAGACGCT
  AATGCTTGTA GTGTGACCAA GTGACTTCAT GGTTGGAATT CAGTATTAAA TTCCTATGAT
  CTGCTGTAGC TGTCCAAAAT CCACAACAGT GAGGAAAAAG CTATTGCTCT CTAAACAGAA
  TCTATATCCT GCCCATTTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	MSM/Ms
ss146651377	ENSMUSSNP2868470	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	MSM/Ms
rs48023736					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:60551505 () rs orientation: forward

Symbol	Name	Function Class
Itgb6	integrin beta 6	Intron
Rr557685	regulatory region 557685	within coordinates
Rr557686	regulatory region 557686	32 bp distal
Rr557687	regulatory region 557687	1203 bp proximal
Rr557688	regulatory region 557688	1472 bp proximal
Tssr24212	transcription start site region 24212	1370 bp downstream
Tssr24213	transcription start site region 24213	1475 bp downstream
Tssr24214	transcription start site region 24214	1509 bp downstream