rs48024135 SNP Detail

Summary

• ID
  rs48024135
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:81114854 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATACTACT ATCAACGAAA
  CAATCTTACC CAAATCCCAC CACATGATAT TTACAAGGAG AAGCAATTGC TCAAGATGTA
  CAAAATTAGT AGACTCCAGA CTCCAGTAGA ATTTTCTTCA TAATGAGTTG ACCATTTCTT
  CATTTGATTC CTAGATTAAC CATCTGTGAG CCAGAAAAGT TTAACAACAA TTATTCTGCA
  Y
  GGAAAATGTA AACCTCAAAA GCTAATTAAA ACATTTCAAA GTCAATTAAA AACATCTCAG
  GCCTAGCAAT CCAGCCAATT CTATAGCTAC AGCTCCTAAG CAGTCCAATA TTATTTCTGA
  TAATATTCTC TTTTTATTCC CTACGAAGAT TGGCCACTTA ATGGCAGAAT GGTGCAGAAA
  TGATACCTGA ATGTGAAATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	WSB/EiJ
ss62937151	NES17409711	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	WSB/EiJ
rs48024135					SNP	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62937151	NES17409711	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:81114854 () rs orientation: forward

Symbol	Name	Function Class
Gm33596	predicted gene, 33596	within coordinates
Rr393006	regulatory region 393006	151 bp upstream
Rr531544	regulatory region 531544	659 bp proximal
Rr531545	regulatory region 531545	1690 bp proximal