rs48024775 SNP Detail

Summary

• ID
  rs48024775
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:52202388 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCGCCCAA AGTCTGTCTG
  TCCTAGGCCA GGGCAGCTTA GGAGAGGGGC GGCGGGTCTC CGCTCTACTC GCCCGCCCGC
  CCCGCCCCCT CACTGCAGCA GCCTCCTCCC TTTCCCCTAG CCGGCCCGGG TGCTCCACAC
  AGTTCTCTGG ACTTGGGGCC CCTATCAGAG GTGTTCCAAA CACCAACTTC TGGTTCTCGG
  R
  CCCTAGATCC AGAGGCACCC ATCGAGGACG AAGGCAGGCT CCAGAGAAAG CTGACGCGCT
  GGTAGATCCT GGTGGCCTGC GTGGAGGCAG CGGCCGGTTT GCAGGAAGGA GACACTTACT
  GGGATCGATG GGGGGCTTGT CTCCGCCGCT CTCATTCTCG GCATTGTTTT CGGAGAAGGC
  GCCTTCGCTG GGTTGTTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60886889	NES15970089	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48024775					SNP	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60886889	NES15970089	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:52202388 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17430	CpG island 17430	901 bp distal
Cpgi17431	CpG island 17431	within coordinates
Gm57855	predicted gene, 57855	within coordinates
Gm68361	predicted gene, 68361	1783 bp upstream
Hoxa9	homeobox A9	within coordinates
Rr146300	regulatory region 146300	within coordinates
Tssr61006	transcription start site region 61006	797 bp upstream
Tssr61007	transcription start site region 61007	177 bp upstream
Tssr61008	transcription start site region 61008	152 bp upstream
Tssr61009	transcription start site region 61009	414 bp downstream
Tssr61010	transcription start site region 61010	537 bp downstream
Tssr61011	transcription start site region 61011	737 bp downstream
Tssr61012	transcription start site region 61012	757 bp downstream