rs48024863 SNP Detail

Summary

• ID
  rs48024863
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30255218 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCGTATGCGT TTCCAACGTT GCATGTTGCG ATAGATAAGT
  GTGGAAGGAG AAGGTTCAGG CTCGGAAGGC TGCATGGACA GAGAGGCTCA GCTGGGTGAC
  Y
  GTGTCCTAGC CCTCCCAACA TGCCCTGAAG CTCCAGGCCA GCCTTGGATA CCTACTTCAT
  CATCGGGGGT ACCCTCGGTC TCAGGCTGCA GTGGGGATG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60990779	NES16136672	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	C	T	C	C	T	T		C	T	C	C		T
ss148682411	ENSMUSSNP1446617	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						C
ss322135239	CHEV_7_31340812	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48024863					SNP	T	T	T	T	T	C	T	C	C	T	T	T	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60990779	NES16136672	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30255218 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18810	CpG island 18810	1196 bp distal
Hspb6	heat shock protein, alpha-crystallin-related, B6	350 bp downstream
Lin37	lin-37 DREAM MuvB core complex component	within coordinates
Tssr65782	transcription start site region 65782	999 bp downstream
Tssr65783	transcription start site region 65783	933 bp downstream
Tssr65784	transcription start site region 65784	909 bp downstream
Tssr65785	transcription start site region 65785	854 bp downstream
Tssr65786	transcription start site region 65786	841 bp downstream
Tssr65787	transcription start site region 65787	746 bp downstream
Tssr71789	transcription start site region 71789	1105 bp upstream
Tssr71790	transcription start site region 71790	963 bp upstream