rs48025077 SNP Detail

Summary

• ID
  rs48025077
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:48745302 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGTAAAG TGTACAGAAT
  GAGGGCAAAC TCTCAGTTGA ATTCAGTGTG GTTGTCGTGC AAGGGCCAGG GGCCAAGTTT
  CTGAAGAAGT TTCCCTGGGG AGACATGAAC GAACATATAT ATTCATTCCA GAAAGGGCAC
  AACGAAAGAC CCAGCAAACA GAAGATTCTA TTTATGTCTA GCTTGACAAA TGTGCTGCGA
  R
  GTCTTGTGCC AGCTTGACAC ACAAACTAGA GTTACCCGAA CCTTAATTGA GAAAATGCCT
  TCATAAGATC CGGCTGTAAG ACCTTTTTCC TAATTAGTTA CTAATTGGGA ATGGCCTAGC
  CCATTGTGGG TGGTGCCATC CCTGGAATGG TGGTCCTTGG TGCTACAACA GAGCAGACTG
  AGTCAGCCAT GGGGAGCAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss132111684	ENSMUSSNP3645259	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48025077					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:48745302 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2785	CpG island 2785	983 bp distal
Cpgi2786	CpG island 2786	253 bp distal
Cpgi2787	CpG island 2787	848 bp proximal
Gm16170	predicted gene 16170	982 bp upstream
Gm73211	predicted gene, 73211	within coordinates
n-TPtgg4	nuclear encoded tRNA proline 4 (anticodon TGG)	1805 bp upstream
n-TTtgt2	nuclear encoded tRNA threonine 2 (anticodon TGT)	784 bp downstream
Rr402520	regulatory region 402520	924 bp downstream
Rr446140	regulatory region 446140	993 bp distal
Rr446141	regulatory region 446141	1267 bp distal
Rr446142	regulatory region 446142	492 bp distal
Rr446143	regulatory region 446143	803 bp distal