rs48025687 SNP Detail

Summary

• ID
  rs48025687
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156768754 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATAGAGATA CGTGTGTGTG TGTGTGTGTG TGTGTGTGCG
  TGTGTGTGTA ATTGTCCCAA GTTATTAACT GCTTTTAAAG TAGGAAAAAA TAAGGAGCCT
  T
  GGGGAATTTC ATTTGGTATA AATGTCTTGC AGCCACTTGA GTTGGAGCTT CATAAAAACA
  AAGATCCCAG GTCCCCACAT CTGCCAGTAA TTTTCACAG                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145809618	ENSMUSSNP42814	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48025687					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156768754 () rs orientation: forward

Symbol	Name	Function Class
4930439D14Rik	RIKEN cDNA 4930439D14 gene	989 bp downstream
Cpgi904	CpG island 904	955 bp distal
Ralgps2	Ral GEF with PH domain and SH3 binding motif 2	1558 bp upstream
Rr13382	regulatory region 13382	1647 bp proximal
Rr19959	regulatory region 19959	247 bp proximal
Rr28786	regulatory region 28786	153 bp distal
Tssr9581	transcription start site region 9581	1495 bp downstream
Tssr14477	transcription start site region 14477	1635 bp upstream
Tssr14478	transcription start site region 14478	1569 bp upstream
Tssr14479	transcription start site region 14479	1527 bp upstream
Tssr14480	transcription start site region 14480	1144 bp upstream