rs48027402 SNP Detail

Summary

• ID
  rs48027402
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:4217869 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                        CTACATTATA CTAGGCAACA TAAAGAGCTC AAAGCCATCA
  GGTCCCACCT CTGTTAGATT TACCTGGAAC TCAGTGTTTT ATTCTCACAC AAAGATGTTT
  Y
  CACTTCCTGA CCCATTTCTA AAGGTCCTCG CTGCTCTCTA TCACCAAATT CTGAAATTGG
  TTGGTTTTTC CTTTAAGTTG TTTGGTTGTT CAACACGTTT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss52129289	NES15245675	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs48027402					SNP	C	C	C	C	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52129289	NES15245675	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:4217869 () rs orientation: reverse

Symbol	Name	Function Class
Akap12	A kinase anchor protein 12	within coordinates
Cpgi1267	CpG island 1267	727 bp distal
Gm67397	predicted gene, 67397	within coordinates
Gm67407	predicted gene, 67407	1796 bp downstream
Rr384063	regulatory region 384063	1304 bp downstream
Rr384064	regulatory region 384064	1242 bp upstream
Rr426944	regulatory region 426944	1479 bp distal
Rr426945	regulatory region 426945	573 bp distal
Tssr3113	transcription start site region 3113	1734 bp downstream
Tssr3114	transcription start site region 3114	1338 bp downstream
Tssr92240	transcription start site region 92240	1528 bp downstream
Tssr92241	transcription start site region 92241	1495 bp downstream
Tssr92242	transcription start site region 92242	606 bp upstream