rs48027836 SNP Detail

Summary

• ID
  rs48027836
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172851117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTAAGAGA ATCCAGGTTC
  AGGATGAGAT CACACTAAGC TGTGCAGAAA AGAATCCCTA GCACCAGCAT AAAGCATGTT
  AAGTACGTGG TGCTCTGCTT ACAGGCGGGG CTTCTCTAGG CTTTCACAAA CACTTTGATA
  TTGCTAAATT ATAACATTAA AATTTTGTGA CTAAAATGTT GACTGGTCAT TTTGGTGTGA
  R
  AGCCCTGTCT TTACCTCAAG TGCCTGTCTT CCTTCTCTTC TCTAGATATA CCCGATGGCT
  GTGGTAGCCA CTGCAGAGAG GGGCCTGATT GTCTATCAGC TGGAGAACCA GCCCTCTGAG
  TTCAGGAGAA TCGAGTCTCC CCTGAAGCAC CAGGTGGGTG CCACAGCTCT GAGAAGCGCA
  CGGTGAGCGC CTGCCATGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss148328167	ENSMUSSNP2551446	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs48027836					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172851117 () rs orientation: forward

Symbol	Name	Function Class
Rae1	ribonucleic acid export 1	within coordinates
Rr374300	regulatory region 374300	453 bp upstream