rs48027974 SNP Detail

Summary

• ID
  rs48027974
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:128128062 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGGCTGCCC TGGAACACTC TGTGTAGACC AGGCTGCCCT
  GGAACACTCT GTGTAGACCA GGCTGGCCCA GAACTCACAG AGAACCTGAC TGCTTCTGTC
  Y
  CCTGAACACT AGGATAAAGG AGTGTGCTGC CACACAAGCT CAACTAAGCG TGTCCCGCTT
  TCTATTTCCT GAGGAGACTC AGTCCAAACT CCCATCTCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147556458	ENSMUSSNP6427936	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48027974					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:128128062 () rs orientation: forward

Symbol	Name	Function Class
Rr564691	regulatory region 564691	778 bp distal
Rr564692	regulatory region 564692	316 bp distal
Rr564693	regulatory region 564693	1584 bp proximal