rs48028969 SNP Detail

Summary

• ID
  rs48028969
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:52313595 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T ATGAAGCCAC TAGAAACCAC TACCCCGTCA CACGTTCTCT
  GCTGACCAGA CAGAGCTAAT GGAAATATCC TCTTTATTGC CTTCCACTTC ATTTAGTACC
  R
  TTATCTTAGG TATCATTTTT AAAAAAATTA TTATTAAAAA AAGCAGAACC CACTAGGGAT
  TACAAGTCCC ATAAAACCAG CTCTATCCCA GAGGAGGAGC A                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	MSM/Ms
ss146590315	ENSMUSSNP4179484	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	MSM/Ms
rs48028969					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:52313595 () rs orientation: forward

Symbol	Name	Function Class
A430018G15Rik	RIKEN cDNA A430018G15 gene	1429 bp upstream
Arl5a	ADP-ribosylation factor-like 5A	within coordinates
Cpgi11647	CpG island 11647	608 bp proximal
Rr556938	regulatory region 556938	1877 bp distal
Rr556939	regulatory region 556939	within coordinates
Rr556940	regulatory region 556940	1308 bp proximal
Rr556941	regulatory region 556941	1373 bp proximal
Tssr494	transcription start site region 494	1334 bp downstream
Tssr17726	transcription start site region 17726	1421 bp upstream
Tssr17727	transcription start site region 17727	1658 bp upstream
Tssr24072	transcription start site region 24072	1212 bp downstream
Tssr24073	transcription start site region 24073	1228 bp downstream
Tssr24074	transcription start site region 24074	1243 bp downstream