rs48029128 SNP Detail

Summary

• ID
  rs48029128
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:53627861 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAG GGTATTTGTG ACATTTAGTG
  Y
  CTTTATTCTC TCTGCAAATA ACAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss149017786	ENSMUSSNP5170266	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
ss324342442	CHEV_13_53569194	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48029128					SNP	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:53627861 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5623	CpG island 5623	669 bp distal
Cpgi5624	CpG island 5624	1781 bp proximal
Gm33763	predicted gene, 33763	within coordinates
Msx2	msh homeobox 2	1045 bp upstream
Rr281405	regulatory region 281405	660 bp distal
Rr281406	regulatory region 281406	1339 bp proximal
Tssr122586	transcription start site region 122586	1100 bp upstream
Tssr122587	transcription start site region 122587	1038 bp upstream
Tssr122588	transcription start site region 122588	1015 bp upstream
Tssr122589	transcription start site region 122589	975 bp upstream