rs48029369 SNP Detail

Summary

• ID
  rs48029369
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141546742 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACACAGGGG TATGAGAAGG AGAAGCGTTG CTGCTGTGTC
  TTCTGTCGAC CCCTCCCTTT CCGGTCCAGG TGACCCTGTC CCTTCCACAA GGTTGCTGAA
  W
  TTGGCCAGGT TAGTTTGCAT TGTGTCCTCA GTTGATTGGT TGGTGGTCTG GCTACTTACT
  GGTGATTGGT TCGGGGTGAG CATCTGACTC AACCCTAAA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147744235	ENSMUSSNP2680915	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48029369					SNP	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141546742 () rs orientation: forward

Symbol	Name	Function Class
Cela2a	chymotrypsin-like elastase family, member 2A	within coordinates
Cpgi15246	CpG island 15246	354 bp distal
D4Mit32	DNA segment, Chr 4, Massachusetts Institute of Technology 32	420 bp proximal
Gm56298	predicted gene, 56298	within coordinates
Tssr40105	transcription start site region 40105	1532 bp downstream
Tssr40106	transcription start site region 40106	1501 bp downstream
Tssr40107	transcription start site region 40107	1449 bp downstream
Tssr40108	transcription start site region 40108	387 bp downstream
Tssr40109	transcription start site region 40109	352 bp downstream
Tssr40110	transcription start site region 40110	329 bp downstream
Tssr40111	transcription start site region 40111	1894 bp upstream
Tssr40112	transcription start site region 40112	1922 bp upstream
Tssr40113	transcription start site region 40113	1951 bp upstream
Tssr44369	transcription start site region 44369	1534 bp upstream
Tssr44370	transcription start site region 44370	1494 bp upstream
Tssr44371	transcription start site region 44371	1463 bp upstream
Tssr44372	transcription start site region 44372	1432 bp upstream
Tssr44373	transcription start site region 44373	1145 bp upstream
Tssr44374	transcription start site region 44374	299 bp upstream
Tssr44375	transcription start site region 44375	66 bp upstream
Tssr44376	transcription start site region 44376	48 bp upstream
Tssr44377	transcription start site region 44377	553 bp downstream
Tssr44378	transcription start site region 44378	672 bp downstream
Tssr44379	transcription start site region 44379	1921 bp downstream
Tssr44380	transcription start site region 44380	1933 bp downstream