rs48030859 SNP Detail

Summary

• ID
  rs48030859
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:79659371 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGGGTGGG GCAGGCTGCC
  TGGAGCCTTC CCTAGTGGTA ACTGGGAAGA AATGGGCTTT GGAAACCACC ACCCCCATCA
  TCTCTGTGAA CTAGCTTCAA TTGTCTGTGC CCAAGTTCCT TCAGGGCAGA GACAAAATTG
  GCCTCTTGTC CCTGGTTCTC ACGAACCCTG AAAAGGACAT TAATGTTTGA GGTGATTGAT
  Y
  GACCCAGGAC TAACAAACGA CCCTTGTCGG GAGATGGAGG CCTTGAAGGG ACCCTTTGTA
  GCCCACAGGG CTTCTTCGGA CTGGCTGGTA GGAGACCTTG AGACCCCTGC TGGATTTGGA
  GTGTCAGATC TACAGCCAGT GGGAAGCATC TATAGAATGC TTGCTGTATG ACCAGGCTCC
  TAGAGCTGAG TTAGGTTTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52386576	NES15268674	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48030859					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52386576	NES15268674	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:79659371 () rs orientation: forward

Symbol	Name	Function Class
Misp	mitotic spindle positioning	within coordinates
Rr225117	regulatory region 225117	within coordinates
Tssr94403	transcription start site region 94403	858 bp downstream
Tssr94404	transcription start site region 94404	1051 bp upstream
Tssr94405	transcription start site region 94405	1136 bp upstream
Tssr94406	transcription start site region 94406	1167 bp upstream