rs48031090 SNP Detail

Summary

• ID
  rs48031090
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:59201402 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGCACCTC ATCTGTACTC
  ACCCTAGGTC CTGCTGGTTT TTGATCCTGA CCATGTGACT GGCTGATCTT GCAGCTGAAG
  GGATGGGACG TTCCCAGTGT AGAGGGAACG AGCTGGAGAA AGCTTTCAGG GGGTGTCGCG
  TAAAGACGGA ACATGATCCT GATTGCAGCT GGACACTGGG ACTGCCAGGC CTCACCGTGC
  Y
  CTTCCCTGTG CTCTTCAGAA TTTATTAAAG AGTCGCATGA GCAGGGGCTG GAGGGATGGC
  TCAGTGGTTA AGACTGCAGC ATAGTGCTCT TATGGAGGAT TCAGGTTCAG TTCCCAGCAG
  CTACTTCGCG TGCCTAACAG CTACCTGTAA CTCCAGTTCC ATGGGGACCA GCACCTCTAC
  CCTCTGTGGG AACCTATACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52642423	NES15460242	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48031090					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52642423	NES15460242	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:59201402 () rs orientation: forward

Symbol	Name	Function Class
4930415C11Rik	RIKEN cDNA 4930415C11 gene	1308 bp downstream
Ntrk2	neurotrophic tyrosine kinase, receptor, type 2	within coordinates