rs48032576 SNP Detail

Summary

• ID
  rs48032576
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148712016 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCTTTAACT CATCAAGGCT GCCAAGTGTG GATGCTGCCC
  TAGCAGTCTA CACGATAGTC GTGATACTCT CTCCTCTTTC AATAAGTGAA GAAACTGAGG
  Y
  ACAGAGTTGA GTACCTTGCA TGAAGTCACC ATGAGAAAGA GGCCCCACTA GGGTCTGAAT
  CCTACAGCAA AAAACTACTT GGATGTTTCA GTATTTCGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss148013322	ENSMUSSNP1828853	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs48032576					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148712016 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15308	CpG island 15308	347 bp distal
Rr100546	regulatory region 100546	15 bp distal
Rr398860	regulatory region 398860	309 bp downstream
Tardbp	TAR DNA binding protein	540 bp upstream
Tssr44612	transcription start site region 44612	813 bp upstream
Tssr44613	transcription start site region 44613	784 bp upstream
Tssr44614	transcription start site region 44614	526 bp upstream