rs48033358 SNP Detail

Summary

• ID
  rs48033358
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:153423499 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGT CCCAAGTCAC ATAAACTCTG
  Y
  TATCTCCTTA CCTGGAACTT CCTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss60820880	NES16434192	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	C	C	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs48033358					SNP	T	T	T	T	T	T	C	C	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60820880	NES16434192	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153423499 () rs orientation: forward

Symbol	Name	Function Class
Cpgi868	CpG island 868	1732 bp proximal
F630010C12Rik	RIKEN cDNA F630010C12 gene	669 bp downstream
Npl	N-acetylneuraminate pyruvate lyase	Intron
Rr372265	regulatory region 372265	965 bp downstream
Rr420696	regulatory region 420696	within coordinates
Rr420697	regulatory region 420697	1689 bp proximal
Tssr14276	transcription start site region 14276	1944 bp downstream
Tssr14277	transcription start site region 14277	1981 bp downstream