rs48033882 SNP Detail

Summary

• ID
  rs48033882
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:150838948 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGAAAAA TGCCCTATGG
  ACCTGCCTAT GGCCAATCTG AGGAAGGCAT TTTCTCAAGT GAGGTTCCCC TTTTCAGATA
  ACTCTTGGCT TATATCAAGT TGCCAAAATC CTAACCAGGA CATGGACTTG CCCATTTACT
  GACCAGTTGG TAAAGGCAGG TAATTGGAGA TGCCCAAGTG GCTCACTTAG ATGCCAGAGA
  Y
  ATTGCTTCTT GCCTCTATTT ATAACAGCAA CTTGATCCCC TTCTGCTGAC TAGGGTCTGT
  TGCCTCTGTC AAAACAGTGA TCCTGTTTTC ATGTCTGGTG TCTTGGCATA GACAAAGTCC
  TGGTGGCAGA GTGTTGAAAG TTTACTGTGT TTCTTCTCAT GTCTACCAGT AGCTGTGGCT
  CCTTTAAGTG CCAGACATGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60858726	NES15999354	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48033882					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60858726	NES15999354	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:150838948 () rs orientation: forward

Symbol	Name	Function Class
Rr625814	regulatory region 625814	1637 bp proximal