rs48033993 SNP Detail

Summary

• ID
  rs48033993
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130488186 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCAAACAA ACTGAGACTG
  TATGCATACT GAATCAGGCC TTGAACTCTG ATATCTTTGG GTCATCTTTC CTTCCCAGAG
  CTTAAAGCAC GGCTACCCCG TCTCCTCGTC CACACTGGTC CTGGCTACTG CACTTGAGTA
  CCTCACAGCT TATAAACAGT TTGATCTATT GATGACCGAA TGCCGGCGCT GGAGGTCAGA
  R
  CCTTTGTTCA TCGTCTTAAT CCTATGTTCA AGACCCTCTG AGTAAATGAA TGAATCTTTA
  ATAATGAGCT GCTAATGATC ACCTTTGGAA CTGGAAGGGT GTGGGAGACT CAACCGAGGG
  ACAAATCTTG TAAACTTACA AATTCTATGA TCAGAATGAA TTGAGCTATG AAAGAAGTGA
  AGGCCACGGC CTGTTAGAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61080646	NES16590425	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48033993					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61080646	NES16590425	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130488186 () rs orientation: forward

Symbol	Name	Function Class
Gm36373	predicted gene, 36373	1822 bp upstream
Gm65113	predicted gene, 65113	within coordinates
Ostc	oligosaccharyltransferase complex subunit (non-catalytic)	1380 bp downstream
Rr398016	regulatory region 398016	198 bp downstream
Rr585194	regulatory region 585194	184 bp distal
Rr585195	regulatory region 585195	303 bp distal
Rr585196	regulatory region 585196	204 bp proximal