rs48035371 SNP Detail

Summary

• ID
  rs48035371
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:160904230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCACATGT GTATCATACT
  TCCTTGTTTT CTCTGCGACC TGATCCTGTC CCTCCTCCCA AATGGTTTTC CTTTCTGCTT
  TCACTTTATT ACCCTACTTT ATGATCTCGT CCTTCTGCTT ACGCTCCCTT TCTGTTTTCA
  TGACCACATG CACATATACA CACATCTAAG TTCTGAATAT TAGAGAAAAC ATAGGCACTT
  R
  TCTGGCTTAC TTTACCTAAC ATCTAAGAGT ATCCATTTTC TTGAAAATGT CATGGTTTCA
  TTTTTTTTTT TTTACAGCTT AAAAAAAATT CTATTGTGTA TTCCTATCAT CTTCCCTCCC
  TTCCTCCCTC CCTCTCTTTC TCTCTCTTTC TTTTTCTTTG TCTTTATTTC TTTTTCTTTT
  TTTGAGACAA GGTCTCTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss145905545	ENSMUSSNP5684674	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48035371					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:160904230 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cenpl	centromere protein L			Intron
				Noncoding-Transcript-Variant
Rr396459	regulatory region 396459			73 bp downstream
Rr421754	regulatory region 421754			within coordinates