rs48035873 SNP Detail

Summary

• ID
  rs48035873
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:39834368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTAGGAAG CCATATTTCT
  TCAGTCCCCA AGGCCCAAGG TTGGTCTATG GGGCATTTCT CGACTCTATC CAGGTTCTCT
  GCTCATTTAG AACTTGCTGT CTGACATAGT TCTTTCTTGT CTTCTGAATA GTTTTCCTTG
  AGATTCCCAT TCTTCCCACA GTCATACCAA AGTAGCCAAT ATCCAAAGTT AGTTCTGGCC
  W
  TGCAGTAGGC AATAAGCGAG CTTCCAAAAT TAGTTCCAAC CATGCCATGA ATGTTAAGTG
  AGTCCTGATA ATTCTGAATT CACTCTGGGC AATAGGTGGT GCTGTTGTAT GGTTCTTTAA
  GCTAAGATTT AAGTTTGGGG AAATTCTGTG TGTTGTGTAG TAAATCAAAT CTCCCTATTC
  AGAAATGTGA AAAGCGCTCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss61271507	NES16888121	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs48035873					SNP	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61271507	NES16888121	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:39834368 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1451	CpG island 1451	1315 bp proximal
Mfsd4b3-ps	major facilitator superfamily domain containing 4B3, pseudogene	within coordinates
Mfsd4b5	major facilitator superfamily domain containing 4B5	within coordinates
Rr214609	regulatory region 214609	1568 bp distal
Rr214610	regulatory region 214610	within coordinates
Rr224689	regulatory region 224689	832 bp proximal
Rr227431	regulatory region 227431	969 bp distal
Rr401837	regulatory region 401837	1798 bp upstream
Tssr97348	transcription start site region 97348	1772 bp downstream
Tssr97349	transcription start site region 97349	1800 bp downstream
Tssr97350	transcription start site region 97350	1823 bp downstream
Tssr97351	transcription start site region 97351	1871 bp downstream