rs48036461 SNP Detail

Summary

• ID
  rs48036461
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:56260897 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCTACACA GAGAAACCCT
  GTCTCGAAAA ACCAAAAAAA AAAAAAAACA AAAAAACAAA AAAACCTCAG TTTTCTCATC
  TAGAAATTGA GCTAAGAACC TTGGGGTTTG TAGTAAGTAT AGGAGCTCAT GCTTCCATGC
  ATAACAGGTC CTACATGGCC TACGGAAGCT CCTGTTCCTT TGTCTCCTCC AGCTCTCGTG
  K
  CTCTAAGCCA GCCCAGAGTG CAATGCCATG CTTCTCGGTA TCCCGTGGCC GTGGACTGCT
  CCTGGACTCC TCTCCAGGCT CCCAACTCCA CCAGATCCAC GTCCTTCATT GCCACTTACA
  GGTCAGAAAA TGGAAAGGGT TTAGGAGGAA GCCAAGTATC AAGAGATTCC AATGTCCTGA
  TCCACTCAGG GTAGGAGGCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62801954	NES17366688	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48036461					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62801954	NES17366688	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:56260897 () rs orientation: forward

Symbol	Name	Function Class
Ebi3	Epstein-Barr virus induced gene 3	within coordinates
Gm16712	predicted gene, 16712	874 bp downstream
Rr340009	regulatory region 340009	696 bp distal
Tssr145247	transcription start site region 145247	1198 bp downstream
Tssr145248	transcription start site region 145248	1172 bp downstream
Tssr145249	transcription start site region 145249	1158 bp downstream
Tssr145250	transcription start site region 145250	1139 bp downstream
Tssr145251	transcription start site region 145251	1115 bp downstream
Tssr145252	transcription start site region 145252	1101 bp downstream
Tssr145253	transcription start site region 145253	1083 bp downstream
Tssr145254	transcription start site region 145254	1059 bp downstream
Tssr145255	transcription start site region 145255	1035 bp downstream
Tssr145256	transcription start site region 145256	within coordinates
Tssr145257	transcription start site region 145257	421 bp upstream
Tssr145258	transcription start site region 145258	443 bp upstream