rs48037461 SNP Detail

Summary

• ID
  rs48037461
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:72029085 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGAT CCCCCCCTTT TTTTCCCTGA
  M
  TGTGCCCCTC TCTCCAGGGT GTGGT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146758010	ENSMUSSNP6841680	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48037461					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72029085 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm75163	predicted gene, 75163			within coordinates
Rapgef4	Rap guanine nucleotide exchange factor (GEF) 4			Intron
				Noncoding-Transcript-Variant
Rr558927	regulatory region 558927			1884 bp distal
Rr558928	regulatory region 558928			1361 bp distal
Rr558929	regulatory region 558929			1509 bp distal