rs48039144 SNP Detail

Summary

• ID
  rs48039144
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72437097 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTTA GACCACTGCA GTGGGTTACA
  R
  ATCACTCTCC ATGCTGTCTC TGACT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136622061	ENSMUSSNP2757331	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
ss323002562	CHEV_9_72377622	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48039144					SNP	A	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72437097 () rs orientation: forward

Symbol	Name	Function Class
4930509E16Rik	RIKEN cDNA 4930509E16 gene	within coordinates
Cpgi22017	CpG island 22017	1653 bp proximal
Rr401508	regulatory region 401508	542 bp upstream
Rr401509	regulatory region 401509	1804 bp upstream
Rr682766	regulatory region 682766	within coordinates
Rr682767	regulatory region 682767	585 bp proximal
Rr682768	regulatory region 682768	662 bp proximal
Rr682769	regulatory region 682769	1335 bp proximal
Rr682770	regulatory region 682770	1935 bp proximal
Tssr86008	transcription start site region 86008	1913 bp upstream