rs48039176 SNP Detail

Summary

• ID
  rs48039176
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:83403028 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGGCAGA ATTCTTTCTC
  TCTTAGCATT GAGTTTAAAT ATTAAATATT CATGCTTACT CTATAACTCC AAATTCATTC
  TAAAATAATT CTTTTCAAAT CTTATAGGTA TTGTTTGTTT TCTACTCTTT TAATATTTAA
  TAAAAAATAC CAACTGTGTA GCTATGTATG TTCCCACAGC ATTGTGAACC TTGTGGGTTA
  R
  CCCAACAGAT ATTACTGATG TTTTGCCATT ATTCCTTTTA TGAAGCCTGC CATCCTTGCC
  ACACCAGAGT AACTATCATG CAGGCAGGCA TCACATCGAC ACAAGCATAT TTTCTCTATA
  CACTCGCCAT TCAGCAGAGG GTAGCTTCAT GGTTTATAGA ATTTTCAATT GGTAAAAGTA
  ATTGTTCAGT GTTTCAGGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss144833256	ENSMUSSNP4871320	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48039176					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:83403028 () rs orientation: forward

Symbol	Name	Function Class
Gm37989	predicted gene, 37989	1289 bp downstream
Gm69621	predicted gene, 69621	953 bp downstream