rs48039396 SNP Detail

Summary

• ID
  rs48039396
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153472432 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTACCCTGT AGCTGTCTTC AGACACACCA GAAGAGGGCG
  TCGGATCTCA TTACAGATGG TTGTGAGCCA CCACGTGGTT GTTGGGAATT GAACTCAGGA
  C
  CTCTGGAAGA GCAGTCAGTG CTTTTAACCA CTGAACCATC TCTCCAGTCC GCACCCCCTT
  GCCCCAACCT TTGTACTTTT TAAGTCCACT TAAATTGAT                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147999404	ENSMUSSNP3667671	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48039396					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153472432 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Commd7	COMM domain containing 7			Intron
				Noncoding-Transcript-Variant
Cpgi12491	CpG island 12491			1786 bp proximal
Rr567709	regulatory region 567709			56 bp distal