rs48040434 SNP Detail

Summary

• ID
  rs48040434
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:157122179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGCTGGGAG TTGGTTCAGT GCAACTTGTG GATCTGAGTT
  CAAATCTTAG CACTGGGTAT GGCTGGCTGC ATTGTGCACG TAACCCCAGC ATTGGAGGGC
  R
  GAGACCAGCA GATCCCAAGA GGTAACCATC TAGTCTAGCA AAAATGGTTC TAGATCAGTG
  AAAAGGCCCT GCCTCAAGGC AAGAAGGCAT AGAACATCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148095667	ENSMUSSNP3953000	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss320585274	CHEV_2_157105995	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48040434					SNP	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157122179 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12571	CpG island 12571	420 bp distal
Mroh8	maestro heat-like repeat family member 8	710 bp upstream
Rpn2	ribophorin II	within coordinates
Rr397441	regulatory region 397441	1210 bp downstream
Rr568459	regulatory region 568459	1103 bp distal
Rr568460	regulatory region 568460	311 bp distal
Tssr21228	transcription start site region 21228	1234 bp downstream
Tssr21229	transcription start site region 21229	1195 bp downstream
Tssr21230	transcription start site region 21230	1129 bp downstream
Tssr21231	transcription start site region 21231	942 bp downstream
Tssr27165	transcription start site region 27165	741 bp upstream
Tssr27166	transcription start site region 27166	704 bp upstream
Tssr27167	transcription start site region 27167	681 bp upstream