rs48041233 SNP Detail

Summary

• ID
  rs48041233
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30732273 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTACTCCC TAGGGTTCCA
  AGTCCAGCCC TGCCTCTTCC TCCCACTCCT TTGTCACAAA TTCACAGAAG ACAGAGGCCA
  TGGAAGAGAG ACCATGTGGA TTTATCTGAA CAGCCACAGC AGTGCCTAGG GAGACCTCTC
  TCCCCAGGGT GGGAAGACCA TTAGCCTTAA GCCTGACTCC CTCCAGTGGC CTCTTCCTTT
  Y
  AGGATTCTTT CATGTTGATC ACTCTGTAGG CTCTTGGGGT AGAGGGAGGA GGCAGGGGGT
  GGTGAGTTGG TGTAGTTTGG AGGCTCCAGC TGGGGTGCCC ATCAGGGTGC TGGCCCGCAC
  TCACCTGTGG CGATTCAGGC AAAATTGAGA CAACTGCCTA CACTTCCCAC CTGGAAGAAA
  AAGAACCAGT TTGCCCATGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	MOLF/EiJ	NZW/LacJ
ss60989557	NES16136227	PERLEGEN	MM_PANEL2	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J	MOLF/EiJ	NZW/LacJ
rs48041233					SNP	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60989557	NES16136227	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30732273 () rs orientation: forward

Symbol	Name	Function Class
Fxyd5	FXYD domain-containing ion transport regulator 5	within coordinates
Rr644976	regulatory region 644976	1910 bp distal
Rr644977	regulatory region 644977	708 bp distal
Rr644978	regulatory region 644978	645 bp proximal
Rr644979	regulatory region 644979	1897 bp proximal
Tssr65829	transcription start site region 65829	5 bp upstream