rs48041503 SNP Detail

Summary

• ID
  rs48041503
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:97997104 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTCCAATT TCCCTTCAGA
  TATTTTTAAT ATGAAATATA TTTTACTGAC AGTGCCAAAT TCTTTCATCA GGAAACCTTT
  CTCAGGAGGG TTTTTTTTTT TTAAAGTGTT TAAATGTCAA ATGTGAATTG GTGATGGGTG
  ATGGAGAGAT CCAAGAGCAG TGATTGTCAG ATGTATGAAT GGATGGCCTT GGTGAGATTC
  R
  TCAAGTGCGC GGTTCCCATG CATGTTGGGT AATGCAAATC TTTGGAAACA CTGATGATGC
  TATCCAGTCT TGTAGCTTTA TTACTTAAGG GGGTAGGGAA AATAAGTTCC CATTCTTTCA
  ACTCCCTTAA GTGTGTGACT CTTTTCCTAG AATAGAAATG CAAATGTGCA TGAAAAGATA
  ATTGTACCAT AGTGTTCACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60914387	NES16220489	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48041503					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60914387	NES16220489	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:97997104 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17778	CpG island 17778	1936 bp distal
Mitf	melanogenesis associated transcription factor	within coordinates
Rr142014	regulatory region 142014	297 bp proximal
Tssr57949	transcription start site region 57949	1682 bp downstream
Tssr57950	transcription start site region 57950	1643 bp downstream
Tssr57951	transcription start site region 57951	1465 bp downstream
Tssr57952	transcription start site region 57952	1413 bp downstream
Tssr57953	transcription start site region 57953	1114 bp downstream
Tssr57954	transcription start site region 57954	1066 bp downstream
Tssr57955	transcription start site region 57955	96 bp downstream
Tssr57956	transcription start site region 57956	257 bp upstream