rs48041561 SNP Detail

Summary

• ID
  rs48041561
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30255696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGAAACCCT GTCTTGAAAA ATCCAAAAAA AGAAAAAAAG
  AAAAAGAAAG TACGTGTCAT CGCTCCTACC TTTCCCAGCA AGACAGACAT GAGGGGTCTA
  Y
  CCAGAAACCT GTACTTGGAG AAGTCACAGT AGAAGGGACA TGCCTTTATC AGCTAGAAGA
  TAGTCGTCCT GTTCTAGGGA CCGTGTCTCC TTGTCAGCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60990776	NES16136599	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	C	C	T	T		C	T	C	C		T
ss322135243	CHEV_7_31341290	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48041561					SNP	T	T	T	T	C	T	C	C	T	T	T	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60990776	NES16136599	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30255696 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18810	CpG island 18810	1674 bp distal
Hspb6	heat shock protein, alpha-crystallin-related, B6	828 bp downstream
Lin37	lin-37 DREAM MuvB core complex component	within coordinates
Tssr65782	transcription start site region 65782	1477 bp downstream
Tssr65783	transcription start site region 65783	1411 bp downstream
Tssr65784	transcription start site region 65784	1387 bp downstream
Tssr65785	transcription start site region 65785	1332 bp downstream
Tssr65786	transcription start site region 65786	1319 bp downstream
Tssr65787	transcription start site region 65787	1224 bp downstream
Tssr71789	transcription start site region 71789	1583 bp upstream
Tssr71790	transcription start site region 71790	1441 bp upstream