rs48041630 SNP Detail

Summary

• ID
  rs48041630
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:5641929 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCAGTGAC AAGGAGCTAG
  AATGGCCTTG GCTGGGTGGG TTGGTCGGGA GGTACTTAGG AAATCAGGTA GAGCCTACCG
  AAGTTGTAAA GTCTTTTTAA TGCTACCAAC CCCGCCTGCA TCCCCAGGCT CGTGGAGGTA
  GTGATACAAA AATACAATTG TCTCCAATGC CCCAAAACTT TTCATTGTAT TTTGTTTCAG
  R
  AATTACCCAG AGCATCAGAG TTCTGTGCAT GACACATGGA CAGCATAAAG GAGGCGGTAA
  TAAGAACCTC AGAATCATGC ACTCAGTACA ATTCTGATTC TTTGTTTTTT GTTTTTTAAA
  TAATGTGTGT TTTTAAAAAA ACAAAACAAA CAAAAAAACC TTAGTATCTG GAGTATATTA
  AAGGAGAACT TGGGAGCAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss134543004	ENSMUSSNP6686300	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
ss320638401	CHEV_3_5576869	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48041630					SNP	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:5641929 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12950	CpG island 12950	105 bp distal
Gm6146	predicted gene 6146	within coordinates
Pex2	peroxisomal biogenesis factor 2	mRNA-UTR
Rr573198	regulatory region 573198	752 bp distal
Rr573199	regulatory region 573199	140 bp distal
Rr573200	regulatory region 573200	475 bp distal
Rr573201	regulatory region 573201	346 bp distal
Tssr28281	transcription start site region 28281	956 bp downstream
Tssr32526	transcription start site region 32526	759 bp upstream
Tssr32527	transcription start site region 32527	707 bp upstream
Tssr32528	transcription start site region 32528	686 bp upstream
Tssr32529	transcription start site region 32529	638 bp upstream
Tssr32530	transcription start site region 32530	625 bp upstream