rs48041794 SNP Detail

Summary

• ID
  rs48041794
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:117160958 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTGA ATCTGGTAAT ATTCTGTGTG
  C
  TAGCCTTCTT ACAAGTCTAC AGTGG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146924568	ENSMUSSNP2890929	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss324842588	CHEV_14_117322768	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48041794					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:117160958 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6842	CpG island 6842	1623 bp proximal
Gpc6	glypican 6	1769 bp upstream
Rr497535	regulatory region 497535	1394 bp proximal
Tssr127141	transcription start site region 127141	1659 bp upstream
Tssr127142	transcription start site region 127142	1713 bp upstream
Tssr127143	transcription start site region 127143	1745 bp upstream
Tssr127144	transcription start site region 127144	1833 bp upstream
Tssr127145	transcription start site region 127145	1959 bp upstream
Tssr127146	transcription start site region 127146	1970 bp upstream
Tssr127147	transcription start site region 127147	1999 bp upstream