rs48041826 SNP Detail

Summary

• ID
  rs48041826
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:20413556 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCCTCTAT TACTCTAATC
  CACTGTAAAA GTGCACTCAG AACTGAGCAT CCTTAACAGT TATTCTATTT TTCTCCAGTA
  AGAGAAATGC CAAGATTTCA GGCTGTGGAC TGTGTTCCAG TGGCAAGCAG CAGAGATCCA
  TGTTTAGCTT GTGTGGGTAT TTTTTTTTAT TAAAAATGTT TGTAAATTTG TTTTGTGTAT
  M
  TGGGTGGTTT GTACAGAGAC AATGGTAGAG AAAGACTAAA TAGGGGGAGT TTACGCAGCA
  GAGACATAAA CAAGTGAAAT TTGTGAATTT TACTTTCAGG TTTCCTTGTG ATTCAAGGGC
  CCATGGCATG TCTCTGGATA AGCAGATTGC CATGGATCGA GGTACTCGGC CCTGAGTGGA
  GAGAGTGAGG GAATGAAGAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss63231302	NES17473168	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		C	A	C		A
ss325739979	CHEV_19_20510682	CHEVERUD	SCREENING_POP	f	SNP							C				A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs48041826					SNP	A	A	A	A	A	A	C	C	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63231302	NES17473168	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:20413556 () rs orientation: forward

Symbol	Name	Function Class
D19Mit23	DNA segment, Chr 19, Massachusetts Institute of Technology 23	103 bp distal
Gm32689	predicted gene, 32689	937 bp upstream
Gm41816	predicted gene, 41816	1562 bp upstream
Rr356916	regulatory region 356916	1156 bp distal
Rr356917	regulatory region 356917	845 bp proximal
Rr361508	regulatory region 361508	858 bp proximal
Rr364130	regulatory region 364130	1286 bp distal