rs48041959 SNP Detail

Summary

• ID
  rs48041959
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135718428 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCCTGGCA TGGGGCAGAG
  AGGGAGTGGT CATTGTTTAG GATCTAAGCC TGATAACAAC AAAGGCCCAG GTCCCCAGCT
  CTTGTGTCTT TGTCTGTGTG AGCACATTGT TGGATGTTAT CTCCTATGCC AAGGTCGAGC
  AGGATTGGGG ATGCTCCTCC CTCTGGTACC AAAAGCCTGG ACAAGACAGA TTCCTAGCCA
  K
  CCTTCTCTCT GAGCTTTGAG CCCCTGACCT GCCTTTAGGA CTCCCCAGGA AAAGCACAGA
  TCCCTTCTGA GCTGGGAAGG GACTCCCTGC TCTGTGTCTG CTCAAGAGGG CAACCTGTCA
  GTGCTGGCTG TATGTCCATT TACTCAAGGA GTGAGCCTTT GTTGAGCACC TACTATGTGT
  GTTCCTGAGG GGAGAGGAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60803571	NES16473412	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48041959					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60803571	NES16473412	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135718428 () rs orientation: forward

Symbol	Name	Function Class
Rr372093	regulatory region 372093	1389 bp upstream
Rr419278	regulatory region 419278	1540 bp distal
Rr419279	regulatory region 419279	1722 bp distal
Rr419280	regulatory region 419280	389 bp distal
Rr419281	regulatory region 419281	664 bp distal
Rr419282	regulatory region 419282	1547 bp proximal
Tnni1	troponin I, skeletal, slow 1	Intron