rs48041999 SNP Detail

Summary

• ID
  rs48041999
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:20515483 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGATGGAG TTAGGAGTCC
  ATATGGATTT AACTCTGACC CTGCCATCTC CTGCTTCCTC CGGAGTACAA GGCAGTCAGT
  ACAGAACATG GGAGGGGCCG TGCGTGAGAA TTGAGGGTGT GAAAAAAAAT AAAAATATGG
  GTTGAAGCAT TATTACTAAG AGACACTTGT GGCCTTGAGT TACAGGGAGC GTTGTGTAAG
  R
  TTCTTTTTGA ACCTTTTGAT GGCCTTCTTG GTCTAAAAAG CTGGTTCCTT TCCCTTGAGG
  CAGGCAGGAT GGTGAAAGAA TTTGGTGGTA TTGGCAGAAA TGAGTGCTGG ACTTCGAGAA
  AGGCCAGGAA AAGGCAGAAG CTTCCTTGTG GCAAAGTCCT TAAGTGCCTG AATAACAGAG
  GAAGAGCCTG AAAAGAGACG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60198404	NES15711492	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48041999					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60198404	NES15711492	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:20515483 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8084	CpG island 8084	394 bp distal
Fam131a	family with sequence similarity 131, member A	within coordinates
Rr512911	regulatory region 512911	1815 bp distal
Tssr137489	transcription start site region 137489	1724 bp downstream
Tssr137490	transcription start site region 137490	1704 bp downstream
Tssr137491	transcription start site region 137491	1642 bp downstream
Tssr137492	transcription start site region 137492	522 bp downstream