rs48042414 SNP Detail

Summary

• ID
  rs48042414
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:36418606 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTGCTACC AATGTTACAC
  CTTTAAGACC AGTAAAAAAC CAAATGCAGC AGCTACATGA GTCTTATATT AGACCAATCA
  AAGAATTTTA CTTTTTATAG CTATATTTAT AAGATAAAAA AGCACTTTGT CATTTGCTTA
  ACACAATAAT CAGGATTGCA GTGAATTTTC TAGGAAAAAC CCAACAATCA GCTTTTTTGC
  Y
  TTAAAACTAA GAAGCTGCAG ACTCCCTTTC TTTGAAAGCA GCTTTTTCAG CAGTGGCTCC
  CCTGCTGTGC TTAATTCTCA GTCAAAATGT GAACCATTCT CAGGCTTTGC TGAACCAGCA
  GATAAAGTCT TAGCCATTTT TATTTTCCAA CATGAAACAC AGAACATTCA GTCATTCAGA
  CAACGAGACA AAACACACAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	NZW/LacJ	PWD/PhJ
ss62697332	NES17322095	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	NZW/LacJ	PWD/PhJ
rs48042414					SNP	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62697332	NES17322095	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:36418606 () rs orientation: forward

Symbol	Name	Function Class
Gm54002	predicted gene, 54002	859 bp downstream
Gm66184	predicted gene, 66184	863 bp downstream
H2-T11-ps	histocompatibility 2, T region locus 11, pseudogene	1520 bp downstream
Rr392573	regulatory region 392573	within coordinates