rs48042467 SNP Detail

Summary

• ID
  rs48042467
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:37513147 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTACCTGTA CTTTAGTCCT
  AAACTTAGTA AACAAAGTGG GCTGCAAAGA CTGATTACCA GTCAAAGGCC ATCATCGAGG
  CAGAGACAAA TGGATCTCCG AGTGCGAGAT CAGACTGGAC TCCACAGCTC AGACCAGCCA
  GGGCTACACA GTGACACCCT GTCTCAAAGA AAGGCCTTTA CAGAATGAGA AAGCATTTTC
  R
  TGTACAGCTT TAAATAACTC ATGAATTTAA TATCGGACCA CATACCACAC GAAAGGGTCT
  GAAGAGGCCA CTAAGGCATG CCGCTCAAGT CTAATCTGAC CTGAACTCTG GAAGTGTTTG
  GGCTTCATGT CCTTTGTCCT CCTGTCTTAG GCTGACTCCT CTGAGACTAG TGTCCTGACA
  CAGCAAAGGC TGCCTCGGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	MSM/Ms	SM/J
ss148941466	ENSMUSSNP584977	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		G
ss319691761	CHEV_1_37530911	CHEVERUD	SCREENING_POP	f	SNP			G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	MSM/Ms	SM/J
rs48042467					SNP	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:37513147 () rs orientation: forward

Symbol	Name	Function Class
Mgat4a	mannoside acetylglucosaminyltransferase 4, isoenzyme A	Intron
Rr396000	regulatory region 396000	577 bp upstream
Rr409534	regulatory region 409534	1880 bp distal
Rr409535	regulatory region 409535	363 bp distal
Rr409536	regulatory region 409536	within coordinates
Tssr11302	transcription start site region 11302	1389 bp downstream