rs48042903 SNP Detail

Summary

• ID
  rs48042903
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:108778673 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTGAAGTG GAAGCTTTGG
  ATAACACCTG GAGGAATAAA GAACTGATGA AGTAGAGATG GTACCTGTAG GTAACTGAGG
  AGATTTGTGA AGAAGAGTGT GGGAGCTGAA AGGGCAGTGT GGTGTTAACA TGATCTTAGA
  TGGGAGACTT GAGCAGCCTA AAGCCAATGG GAAAGAGTGA AGTCTTTCCA GTATAGTGGA
  R
  AGGAGTACTG TCTCAGAATA GTAGGACAGT CAAGTCACAT CCAGATAGAG GATATGTAGT
  GTTGGTATAG AAATGGCACC TTTCTATAAG AGAATCACTT ATAAGATGCA GGGAGGAGGA
  AGTAGCTACG GCTTGCAGTT GCAGGTAACT TTATGTTATT ACTGGAATGA AGTTGAAGGG
  ATTTTTTATT TTTTGGTGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61215752	NES16730255	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48042903					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61215752	NES16730255	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:108778673 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16204	CpG island 16204	498 bp distal
Gak	cyclin G associated kinase	1052 bp upstream
Rr616724	regulatory region 616724	788 bp distal
Rr616725	regulatory region 616725	195 bp distal
Tmem175	transmembrane protein 175	within coordinates
Tssr47844	transcription start site region 47844	931 bp downstream
Tssr47845	transcription start site region 47845	789 bp downstream
Tssr47846	transcription start site region 47846	757 bp downstream
Tssr52443	transcription start site region 52443	1129 bp upstream
Tssr52444	transcription start site region 52444	1100 bp upstream
Tssr52445	transcription start site region 52445	1046 bp upstream