rs48042909 SNP Detail

Summary

• ID
  rs48042909
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129507137 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCTG TGCACAAACC ATAATGAATA
  G
  TAGTACGCAT ACACACACAC ACACG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147444367	ENSMUSSNP3193817	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48042909					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129507137 () rs orientation: forward

Symbol	Name	Function Class
Dcdc2b	doublecortin domain containing 2b	within coordinates
Iqcc	IQ motif containing C	1782 bp downstream
Rr600294	regulatory region 600294	903 bp proximal
Tssr43540	transcription start site region 43540	917 bp downstream