rs48043204 SNP Detail

Summary

• ID
  rs48043204
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185318968 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTATGGAT GGATCTTTCT
  GTTCTCTTCT GGTGAGTCTC TTTGGTTTGT GTTTTCTGTC TATGGTATCC TGTTCTGCTG
  GTTGTTACTG GTTTGCACTG TTTTGAGTCA TGGGGTACTT GACTTTCAAG TTTGCTTTTT
  CTTCAAAGGT TATCTCATCC TCTTATTCAT TTGTATCACC ACATGCAATG GAGAATGAAC
  R
  GTTTTTACAA AGCAGCCTTC TGGAATTTTG ATGGCCATTG TGCCAGTTCC ACCGAGCACT
  TTGCAGAGAA AGGAATAGTG AGATTTCTGA ACATATGGAC ATGGGGACAT GTTGTGGTAT
  GCCAGAGGAA TTTGTGGGGA AATTAGATAA TTCTGGGACA GGCTGCAAAG TGTGGTTATC
  CTACCCCATG TCCCCTTGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146436967	ENSMUSSNP52121	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320177554	CHEV_1_187410650	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48043204					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185318968 () rs orientation: forward

Symbol	Name	Function Class
Rr425414	regulatory region 425414	1382 bp distal
Rr425415	regulatory region 425415	875 bp proximal