rs48043212 SNP Detail

Summary

• ID
  rs48043212
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:108215983 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAACAAGC CTTAGTACAG
  CCAAGACTGC ATACAGAAAC ACTGATGAGA TGGAGACACC CCCCAAGACA AAACAAAACG
  AAAACATGCA CTTGGAGTTC CAGGCGAGCC AGGGCTCTGT AGAGACCTTG TCTCAGAAAC
  AAAACACTGG CCACCTGATG CGACGCAGCT CCTCTTGAGT TCAATTCCCA AATTATCACC
  S
  AGTGGAAGGA GAGAACCAAC TCTGACCTCA ACATGCATGC TCCTTCGATT TAATTAAACA
  ATAAGTGTAA TTAAACTTAT GTTTTTAAAA CCCTATAACC TTATGACTAG AAACGTGTGG
  GTAAAGTTAC ACAATATAAG GGAGCTGTGC GTGAGCTGCT TTAGCCGTTG TTATTGCCAG
  AGGCCATCTT CCTAGGCGGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61449059	NES16829235	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48043212					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61449059	NES16829235	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:108215983 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22334	CpG island 22334	310 bp proximal
Gm37401	predicted gene, 37401	511 bp upstream
Gm57050	predicted gene, 57050	28 bp downstream
Gpx1	glutathione peroxidase 1	296 bp upstream
Rhoa	ras homolog family member A	841 bp downstream
Rr383883	regulatory region 383883	within coordinates
Rr686784	regulatory region 686784	522 bp distal
Rr686785	regulatory region 686785	within coordinates
Rr686786	regulatory region 686786	1340 bp proximal
Tssr3010	transcription start site region 3010	958 bp upstream
Tssr87086	transcription start site region 87086	1953 bp downstream
Tssr87087	transcription start site region 87087	1485 bp downstream
Tssr87088	transcription start site region 87088	1303 bp downstream
Tssr87089	transcription start site region 87089	1243 bp downstream
Tssr87090	transcription start site region 87090	264 bp upstream
Tssr87091	transcription start site region 87091	289 bp upstream
Tssr87092	transcription start site region 87092	437 bp upstream
Tssr87093	transcription start site region 87093	459 bp upstream
Tssr87094	transcription start site region 87094	483 bp upstream
Tssr87095	transcription start site region 87095	504 bp upstream
Tssr87096	transcription start site region 87096	524 bp upstream
Tssr87097	transcription start site region 87097	992 bp upstream
Tssr87098	transcription start site region 87098	1144 bp upstream
Tssr87099	transcription start site region 87099	1514 bp upstream
Tssr91519	transcription start site region 91519	1092 bp downstream
Tssr91520	transcription start site region 91520	1137 bp downstream
Tssr91521	transcription start site region 91521	1284 bp downstream
Tssr91522	transcription start site region 91522	1342 bp downstream
Tssr91523	transcription start site region 91523	1535 bp downstream