rs48043521 SNP Detail

Summary

• ID
  rs48043521
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45173685 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCTT GTTGGGGTCC TGTCAGGGGC
  Y
  ATGCTCTGAC TCACAGCTCT GGTAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss136408159	ENSMUSSNP2719258	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss322942706	CHEV_9_45070470	CHEVERUD	SCREENING_POP	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs48043521					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45173685 () rs orientation: forward

Symbol	Name	Function Class
Gm20612	predicted gene 20612	1097 bp downstream
Il10ra	interleukin 10 receptor, alpha	within coordinates
Rr677873	regulatory region 677873	588 bp distal
Tssr89253	transcription start site region 89253	502 bp downstream
Tssr89254	transcription start site region 89254	569 bp downstream
Tssr89255	transcription start site region 89255	659 bp downstream
Tssr89256	transcription start site region 89256	683 bp downstream
Tssr89257	transcription start site region 89257	1789 bp downstream
Tssr89258	transcription start site region 89258	1830 bp downstream
Tssr89259	transcription start site region 89259	1853 bp downstream