rs48043673 SNP Detail

Summary

• ID
  rs48043673
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:13285659 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCAACTGT GTTGTGCCAA
  ATTTCCAGGT ATTTCTGTCC CCCAAAATAT AAATGGTCCC ATGAAGCGCT GTGTGTCTGC
  AGAACACTGA TGAGTGCGTG CACTCCATGT CCCACCTCCC CCACCACAGG CAGTGCCCTC
  TTCCCCAGAG CTCGGTGATT ACACTCTTCT CCACCCCAGA CTTGCCGAGA TCCACTCAAC
  W
  TACTATGACC ACCTGAGATA CAACAAGCAG GACCCACCAT TACACAGAAC ACCACTGTAC
  CCCCTTTTTA GGCTCCTCGT GAAACCATAG TGAAGTCAGA ATGCTTTGAA GGCAAAGCAA
  CAGTACTCCG AAGGTGAGGT GACATAAGAG ACCCTTCCCA CCAATCAGCA TTGTAGCATC
  TTCAGGGACA GGAAATAACC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60327975	NES15829355	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48043673					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60327975	NES15829355	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:13285659 () rs orientation: forward

Symbol	Name	Function Class
Ncoa2	nuclear receptor coactivator 2	within coordinates
Rr370880	regulatory region 370880	within coordinates
Tssr10984	transcription start site region 10984	1659 bp downstream