rs48045858 SNP Detail

Summary

• ID
  rs48045858
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110365588 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGTACCA CATTGTATCT
  TTTTGCCCAC CATCTTTACT TGCAAATGAT CTGGTTCAAG GTCTCTGGCT TCTGCTACAC
  TATAGATACT GGCTCCTCAC CTGGACTCCT CTTGGATACT ATGTTGAGGC CCTGTGTTTT
  AGAGATCCTG CAGCTTTGGA TCTGTAGGAC TGGCCCCTTC ACATGTTCTA GCAGTTCATA
  R
  ATGGGGTAGA TGTTGGGGTG GGCCAACTCA AAGTACTGGG TCTGGGCCTG GATGGAAGCT
  GAGTTGGTCA GCTTTTTGCC CAGGCGAGGG GTAGGGCCAG CTCTTCCAGT TGCTGCATCT
  GATGAGAAAC AGGGCCAGCT CTGCACAGCT CTCAGATGTC AACATGGCTT CAGGTGACAG
  TCTAGACCAG GGATGTCTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145647223	ENSMUSSNP4274136	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48045858					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110365588 () rs orientation: forward

Symbol	Name	Function Class
Ampd3	adenosine monophosphate deaminase 3	1825 bp upstream
B430319F04Rik	RIKEN cDNA B430319F04 gene	296 bp downstream
Cpgi19579	CpG island 19579	1702 bp proximal
Rr653308	regulatory region 653308	1412 bp proximal
Tssr68503	transcription start site region 68503	1682 bp upstream
Tssr68504	transcription start site region 68504	1725 bp upstream
Tssr68505	transcription start site region 68505	1757 bp upstream
Tssr68506	transcription start site region 68506	1788 bp upstream