rs48046196 SNP Detail

Summary

• ID
  rs48046196
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:27211777 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCAT GACTCTGTGA ATCCTGTTTC
  Y
  TGTTGGTCTT TATAGACATC ACTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52338250	NES15369024	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	C	C	C	C		T	C	C	T		C
ss137459695	ENSMUSSNP765330	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						C
ss323958192	CHEV_12_27846643	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48046196					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52338250	NES15369024	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:27211777 () rs orientation: forward

Symbol	Name	Function Class
Rr464214	regulatory region 464214	1578 bp proximal
Silc1	sciatic injury induced lincRNA upregulator of SOX11	1262 bp upstream
Tssr115957	transcription start site region 115957	1302 bp upstream
Tssr115958	transcription start site region 115958	1286 bp upstream
Tssr115959	transcription start site region 115959	1256 bp upstream