rs48046886 SNP Detail

Summary

• ID
  rs48046886
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98850066 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATTCTGTA AAACAAAATA
  ATTATCCATA ATAATACTAA TTGCTTCTTT ACCCGATAAG TAAGGATGAA GTTTTCATCC
  TATAGGACCT GGTATTTCAT CATGGACATC TGCAGTGCGG CTGGGGCCAA CAGCCACACC
  CTTCTGTGGA CCCCATCAGT ACTCTGGCTA GGCTACATAA TAAAGAGTCT CACACTATAG
  R
  ACCTTCTATT TCAACACTGA CATCTGCAGT GCGGCTGAGG CCAGGAGCCA CACCCTTCTG
  CAGACAGACC CCATCAGTAC TTTGGCTAGT CGACAAGCTA GACAAAGTCT GATTTCTGCA
  TTGCCACGTT CTCTGTGCCT GGTGCTAGCC TGTGCTGTTA CATTATTTAA CAGAGAAAGC
  TCTATTTCCA GCAGCTGTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63622757	NES17045888	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48046886					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63622757	NES17045888	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98850066 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7685	CpG island 7685	804 bp proximal
Gm49450	predicted gene, 49450	within coordinates
Rr370012	regulatory region 370012	1033 bp upstream
Rr404613	regulatory region 404613	1285 bp upstream
Rr509236	regulatory region 509236	582 bp proximal
Rr509237	regulatory region 509237	1083 bp proximal
Rr509238	regulatory region 509238	1356 bp proximal
Rr509239	regulatory region 509239	1508 bp proximal
Tssr132970	transcription start site region 132970	866 bp upstream
Tssr132971	transcription start site region 132971	1559 bp upstream
Tssr136333	transcription start site region 136333	907 bp upstream
Tssr136334	transcription start site region 136334	1290 bp downstream
Tssr136335	transcription start site region 136335	1343 bp downstream
Tssr136336	transcription start site region 136336	1356 bp downstream
Tssr136337	transcription start site region 136337	1402 bp downstream
Tssr136338	transcription start site region 136338	1412 bp downstream
Tssr136339	transcription start site region 136339	1452 bp downstream
Tssr136340	transcription start site region 136340	1477 bp downstream
Tssr136341	transcription start site region 136341	1503 bp downstream
Tuba1a	tubulin, alpha 1A	within coordinates